Using embl-format (using taxonomic lineages)
If you checkmark the topic show organism classification in the preferences window after pressing the run button you are enabled to select the sequences which are directly pooled in one profile according to the taxonomic lineages given in the embl-format. Note that it is also possible to define (carefully) profiles by sequences from different lineages.
In the Profile Definition window Fig.4.8 you can edit your taxon sampling in three different ways:
- You can move groups of sequences into the right window from which a tree is calculated.
- By checkmarking the field in the lower left corner you can calculate a tree from all sequences in the left window.
- You can mix the above mentioned methods to generate a tree from profiles (groups moved to the right) together with sequences left in the left window.