Use of the example data
In the folder of PNJ you will find an additional folder examples.
Therein you find four sequence datasets as examples for embl- and fasta-format:
artifical.fas, artifical.embl, chlorophyceae.fas and arthropoda.embl.
Furthermore you will find two substitution models tailoring for the biological datasets (Q_chloro.txt, Q_arthro.txt).